PdamBase: Pocillopora damicornis Genomics Database
 
About PdamBase
    Learn about how the tools in the this database were developed, and get information about developing a related species-specific database.
PdamBLAST
    Use BLAST to identify Pocillopora damicornis contig sequences with sequence similarity to a query   (results are linked to gene ontology data).
Contig Search
    Search for details about the transcriptomic contigs.
Gene Ontology Search
    Search genes predicted by Gene Ontology for Pocillopora damicornis.
Kegg Pathway Search
    Search for kegg pathways found in Pocillopora damicornis.
Pfam Protein Family Classification
    Search for Protein Family motifs in the transcriptome of Pocillopora damicornis.
Download Sequences Used in this Database
    Links to files containing all the sequences used in creating this transcriptome database.
Genetic Stock Search
    Search for known populations or phenotypes of Pocillopora damicornis. Or  Email us to add data/stocks to the database.
  Pocillopora damicornis in the Latest Literature  
 
  Vidal-Dupiol J, Ladrière O, Destoumieux-Garzon D, Sautière PE, Meistertzheim AL, Tambutté E, Tambutté S, Duval D, Fouré L, Adjeroud M, Mitta G. Innate immune responses of a scleractinian coral to vibriosis. J Biol Chem. 2011 May 2;. PMID: 21536670

Vidal-Dupiol J, Ladrière O, Meistertzheim AL, Fouré L, Adjeroud M, Mitta G. Physiological responses of the scleractinian coral Pocillopora damicornis to bacterial stress from Vibrio coralliilyticus. J Exp Biol. 2011 May 1;214(Pt 9):1533-45. PMID: 21490261

Koenig JE, Bourne DG, Curtis B, Dlutek M, Stokes HW, Doolittle WF, Boucher Y. Coral-mucus-associated Vibrio integrons in the Great Barrier Reef: genomic hotspots for environmental adaptation. ISME J. 2011 Jan 27;. PMID: 21270840

Ceh J, Van Keulen M, Bourne DG. Coral-associated bacterial communities on Ningaloo Reef, Western Australia. FEMS Microbiol Ecol. 2011 Jan;75(1):134-44. PMID: 21044100

Grimsditch G, Mwaura JM, Kilonzo J, Amiyo N. The effects of habitat on coral bleaching responses in Kenya. Ambio. 2010 Jun;39(4):295-304. PMID: 20799679

Gaither MR, Rowan R. Zooxanthellar symbiosis in planula larvae of the coral Pocillopora damicornis. J Exp Mar Bio Ecol. 2010 Apr 30;386(1-2):45-53. PMID: 20526380