PocilloporaBase: Pocillopora Transcriptomics Database
About PocilloporaBase
    Learn about how the tools in the this database were developed, and get information about developing a related species-specific database.
    Use BLAST to identify Pocillopora contig sequences with sequence similarity to a query   (results are linked to gene ontology data).
Contig Search
    Search for details about the transcriptomic contigs.
Gene Ontology Search
    Search genes predicted by Gene Ontology for Pocillopora.
Kegg Pathway Search
    Search for kegg pathways found in Pocillopora.
Pfam Protein Family Classification
    Search for Protein Family motifs in the transcriptome of Pocillopora.
Download Sequences Used in this Database
    Links to files containing all the sequences used in creating this transcriptome database.
Genetic Stock Search
    Search for known populations or phenotypes of Pocillopora. Or  Email us to add data/stocks to the database.
  Pocillopora in the Latest Literature  
  Vidal-Dupiol J, Dheilly NM, Rondon R, Grunau C, Cosseau C, Smith KM, Freitag M, Adjeroud M, Mitta G. Thermal Stress Triggers Broad Pocillopora damicornis Transcriptomic Remodeling, while Vibrio coralliilyticus Infection Induces a More Targeted Immuno-Suppression Response. PLoS One. 2014;9(9):e107672. PMID: 25259845

Feuillassier L, Martinez L, Romans P, Engelmann-Sylvestre I, Masanet P, Barthélémy D, Engelmann F. Survival of tissue balls from the coral Pocillopora damicornis L. exposed to cryoprotectant solutions. Cryobiology. 2014 Sep 18;. PMID: 25238734

Hsu CM, de Palmas S, Kuo CY, Denis V, Chen CA. Identification of scleractinian coral recruits using fluorescent censusing and DNA barcoding techniques. PLoS One. 2014;9(9):e107366. PMID: 25211345

Chase TJ, Pratchett MS, Walker SP, Hoogenboom MO. Small-scale environmental variation influences whether coral-dwelling fish promote or impede coral growth. Oecologia. 2014 Sep 10;. PMID: 25205029

Szabó M, Wangpraseurt D, Tamburic B, Larkum AW, Schreiber U, Suggett DJ, Kühl M, Ralph PJ. Effective light absorption and absolute electron transport rates in the coral Pocillopora damicornis. Plant Physiol Biochem. 2014 Oct;83:159-67. PMID: 25146689

Sawall Y, Al-Sofyani A, Banguera-Hinestroza E, Voolstra CR. Spatio-Temporal Analyses of Symbiodinium Physiology of the Coral Pocillopora verrucosa along Large-Scale Nutrient and Temperature Gradients in the Red Sea. PLoS One. 2014;9(8):e103179. PMID: 25137123