PocilloporaBase: Pocillopora Transcriptomics Database
About PocilloporaBase
    Learn about how the tools in the this database were developed, and get information about developing a related species-specific database.
    Use BLAST to identify Pocillopora contig sequences with sequence similarity to a query   (results are linked to gene ontology data).
Contig Search
    Search for details about the transcriptomic contigs.
Gene Ontology Search
    Search genes predicted by Gene Ontology for Pocillopora.
Kegg Pathway Search
    Search for kegg pathways found in Pocillopora.
Pfam Protein Family Classification
    Search for Protein Family motifs in the transcriptome of Pocillopora.
Download Sequences Used in this Database
    Links to files containing all the sequences used in creating this transcriptome database.
Genetic Stock Search
    Search for known populations or phenotypes of Pocillopora. Or  Email us to add data/stocks to the database.
  Pocillopora in the Latest Literature  
  Tout J, Jeffries TC, Petrou K, Tyson GW, Webster NS, Garren M, Stocker R, Ralph PJ, Seymour JR. Chemotaxis by natural populations of coral reef bacteria. ISME J. 2015 Jan 23;. PMID: 25615440

Paz-García DA, Aldana-Moreno A, Cabral-Tena RA, García-De-León FJ, Hellberg ME, Balart EF. Morphological variation and different branch modularity across contrasting flow conditions in dominant Pocillopora reef-building corals. Oecologia. 2015 Jan 4;. PMID: 25556295

Wahl M, Al Sofyani A, Saha M, Kruse I, Lenz M, Sawall Y. Large Scale Patterns of Antimicrofouling Defenses in the Hard Coral Pocillopora verrucosa in an Environmental Gradient along the Saudi Arabian Coast of the Red Sea. PLoS One. 2014;9(12):e106573. PMID: 25485603

Schrameyer V, Wangpraseurt D, Hill R, Kühl M, Larkum AW, Ralph PJ. Light respiratory processes and gross photosynthesis in two scleractinian corals. PLoS One. 2014;9(10):e110814. PMID: 25360746

Mayfield AB, Wang YB, Chen CS, Lin CY, Chen SH. Compartment-specific transcriptomics in a reef-building coral exposed to elevated temperatures. Mol Ecol. 2014 Dec;23(23):5816-30. PMID: 25354956

Sogin EM, Anderson P, Williams P, Chen CS, Gates RD. Application of 1H-NMR metabolomic profiling for reef-building corals. PLoS One. 2014;9(10):e111274. PMID: 25354140