PocilloporaBase: Pocillopora Transcriptomics Database
About PocilloporaBase
    Learn about how the tools in the this database were developed, and get information about developing a related species-specific database.
    Use BLAST to identify Pocillopora contig sequences with sequence similarity to a query   (results are linked to gene ontology data).
Contig Search
    Search for details about the transcriptomic contigs.
Gene Ontology Search
    Search genes predicted by Gene Ontology for Pocillopora.
Kegg Pathway Search
    Search for kegg pathways found in Pocillopora.
Pfam Protein Family Classification
    Search for Protein Family motifs in the transcriptome of Pocillopora.
Download Sequences Used in this Database
    Links to files containing all the sequences used in creating this transcriptome database.
Genetic Stock Search
    Search for known populations or phenotypes of Pocillopora. Or  Email us to add data/stocks to the database.
  Pocillopora in the Latest Literature  
  Asahina AY, Hadfield MG. Draft Genome Sequence of Pseudoalteromonas luteoviolacea HI1, Determined Using Roche 454 and PacBio Single-Molecule Real-Time Hybrid Sequencing. Genome Announc. 2015 Feb 19;3(1). PMID: 25700414

Browne NK, Tay JK, Low J, Larson O, Todd PA. Fluctuations in coral health of four common inshore reef corals in response to seasonal and anthropogenic changes in water quality. Mar Environ Res. 2015 Feb 7;105C:39-52. PMID: 25682391

Kopp C, Domart-Coulon I, Escrig S, Humbel BM, Hignette M, Meibom A. Subcellular investigation of photosynthesis-driven carbon assimilation in the symbiotic reef coral Pocillopora damicornis. MBio. 2015 Feb 10;6(1). PMID: 25670779

Kvitt H, Kramarsky-Winter E, Maor-Landaw K, Zandbank K, Kushmaro A, Rosenfeld H, Fine M, Tchernov D. Breakdown of coral colonial form under reduced pH conditions is initiated in polyps and mediated through apoptosis. Proc Natl Acad Sci U S A. 2015 Feb 17;112(7):2082-6. PMID: 25646434

Tout J, Jeffries TC, Petrou K, Tyson GW, Webster NS, Garren M, Stocker R, Ralph PJ, Seymour JR. Chemotaxis by natural populations of coral reef bacteria. ISME J. 2015 Jan 23;. PMID: 25615440

Paz-García DA, Aldana-Moreno A, Cabral-Tena RA, García-De-León FJ, Hellberg ME, Balart EF. Morphological variation and different branch modularity across contrasting flow conditions in dominant Pocillopora reef-building corals. Oecologia. 2015 Jan 4;. PMID: 25556295