StellaBase: Nematostella vectensis Genomics and Transcriptomics Database






BLAST <i>Nematostella vectensis</i> Genome and Transcriptome

Restrictive BLAST against Nematostella vectensis
Genomic and Transcriptomic Assemblies


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Please choose the assemblies you wish to query, by selecting the checkboxes of your desired data sets. You can restrict the displayed databases by choosing any of the options below and/or adding terms to limit the search by and then clicking "Restrict" Any item left unchanged will return all results.
Strain/Location
Life Stage
Sequencing Technology
Body Region
Medium Used
Temperature
Type of Assay
Time Period
Check here to list all the individual experimental "S-level" assemblies as well.
  

Enter here your input data as Sequence in FASTA format. {REQUIRED}   

Or load it from disk Program: {REQUIRED}

Databases (MUST SELECT AT LEAST ONE): Select All Restricted Assemblies Displayed
AssemblyID LifeStage Origin BodyRegion Assay Temp Medium Time
Nv.C1 Adult Kingsport NS Whole Temperature 29 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: KNG
  • Sequencing Tech: Illumina HiSeq
  • Notes (if available): Nv.S30, Nv.S49
  • Type of Assembly: Combined Replicates
  • Assembled by: Tristan Lubinski
  • Lab: Finnerty
  • Date Sequence: 2013-06-22
  • Sequenced by: Rachel Schweiker
  • Date Assembled: 2013-09-23
Nv.C10 Adult Baruch SC Whole Temperature 21 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: BAR
  • Sequencing Tech: Illumina HiSeq
  • Notes (if available): Nv.S17, Nv.S26
  • Type of Assembly: Combined Replicates
  • Assembled by: Tristan Lubinski
  • Lab: Finnerty
  • Date Sequence: 2013-06-22
  • Sequenced by: Rachel Schweiker
  • Date Assembled: 2013-09-23
Nv.C11 Adult Baruch SC Whole Temperature 29 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: BAR
  • Sequencing Tech: Illumina HiSeq
  • Notes (if available): Nv.S16, Nv.S44
  • Type of Assembly: Combined Replicates
  • Assembled by: Tristan Lubinski
  • Lab: Finnerty
  • Date Sequence: 2013-06-22
  • Sequenced by: Rachel Schweiker
  • Date Assembled: 2013-09-23
Nv.C12 Adult Baruch SC Whole Temperature 21 11 ppt artificial seawater 28 day post treatment

Additional information

  • Clone Line: BAR
  • Sequencing Tech: Illumina HiSeq
  • Notes (if available): Nv.S18, Nv.S34
  • Type of Assembly: Combined Replicates
  • Assembled by: Tristan Lubinski
  • Lab: Finnerty
  • Date Sequence: 2013-06-18
  • Sequenced by: Rachel Schweiker
  • Date Assembled: 2013-09-23
Nv.C13 Adult New Jersey Whole Temperature 21 11 ppt artificial seawater 28 day post treatment

Additional information

  • Clone Line: NJ3
  • Sequencing Tech: Illumina HiSeq
  • Notes (if available): Nv.S35, Nv.S36
  • Type of Assembly: Combined Replicates
  • Assembled by: Tristan Lubinski
  • Lab: Finnerty
  • Date Sequence: 2013-06-18
  • Sequenced by: Rachel Schweiker
  • Date Assembled: 2013-09-23
Nv.C14 Adult New Jersey Whole Temperature 29 11 ppt artificial seawater 28 day post treatment

Additional information

  • Clone Line: NJ3
  • Sequencing Tech: Illumina HiSeq
  • Notes (if available): Nv.S19, Nv.S32
  • Type of Assembly: Combined Replicates
  • Assembled by: Tristan Lubinski
  • Lab: Finnerty
  • Date Sequence: 2013-06-18
  • Sequenced by: Rachel Schweiker
  • Date Assembled: 2013-09-23
Nv.C15 Adult New Jersey Whole Hydrogen Peroxide 21 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: NJ3
  • Sequencing Tech: Illumina HiSeq
  • Notes (if available): Nv.S21, Nv.S23
  • Type of Assembly: Combined Replicates
  • Assembled by: Tristan Lubinski
  • Lab: Finnerty
  • Date Sequence: 2013-04-02
  • Sequenced by: Lauren Friedman
  • Date Assembled: 2013-09-23
Nv.C16 Adult New Jersey Whole Hydrogen Peroxide 21 0.0005% H2O2, 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: NJ3
  • Sequencing Tech: Illumina HiSeq
  • Notes (if available): Nv.S24, Nv.S25
  • Type of Assembly: Combined Replicates
  • Assembled by: Tristan Lubinski
  • Lab: Finnerty
  • Date Sequence: 2013-04-02
  • Sequenced by: Lauren Friedman
  • Date Assembled: 2013-09-23
Nv.C17 Adult Kingsport NS Whole Hydrogen Peroxide 21 0.0005% H2O2, 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: KNG
  • Sequencing Tech: Illumina HiSeq
  • Notes (if available): Nv.S38, Nv.S40
  • Type of Assembly: Combined Replicates
  • Assembled by: Tristan Lubinski
  • Lab: Finnerty
  • Date Sequence: 2013-04-02
  • Sequenced by: Lauren Friedman
  • Date Assembled: 2013-09-23
Nv.C18 Adult Baruch SC Whole Hydrogen Peroxide 21 0.0005% H2O2, 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: BAR
  • Sequencing Tech: Illumina HiSeq
  • Notes (if available): Nv.S27, Nv.S39
  • Type of Assembly: Combined Replicates
  • Assembled by: Tristan Lubinski
  • Lab: Finnerty
  • Date Sequence: 2013-04-02
  • Sequenced by: Lauren Friedman
  • Date Assembled: 2013-09-23
Nv.C19 Adult New Jersey Foot Regeneration 21 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: NJ3
  • Sequencing Tech: Illumina HiSeq
  • Notes (if available): Copy of Nv.S1 No replicates
  • Type of Assembly: Individual
  • Assembled by: Tristan Lubinski
  • Lab: Finnerty
  • Date Sequence: 2012-06-18
  • Sequenced by: Derek Stefanik
  • Date Assembled: 2012-08-13
Nv.C2 Adult Baruch SC Whole Hydrogen Peroxide 21 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: BAR
  • Sequencing Tech: Illumina HiSeq
  • Notes (if available): Nv.S33, Nv.S47
  • Type of Assembly: Combined Replicates
  • Assembled by: Tristan Lubinski
  • Lab: Finnerty
  • Date Sequence: 2013-04-02
  • Sequenced by: Lauren Friedman
  • Date Assembled: 2013-09-23
Nv.C20 Adult New Jersey Whole Not Available 21 11 ppt artificial seawater Not Available

Additional information

  • Clone Line: NJ3
  • Sequencing Tech: Illumina GAIIx
  • Notes (if available): Copy of Nv.S2 No replicates
  • Type of Assembly: Individual
  • Assembled by: Tristan Lubinski
  • Lab: Finnerty
  • Date Sequence: 2010-07-01
  • Sequenced by: Derek Stefanik
  • Date Assembled: 2010-07-29
Nv.C21 Adult New Jersey Foot Regeneration 21 11 ppt artificial seawater 6 hour post treatment

Additional information

  • Clone Line: NJ3
  • Sequencing Tech: Illumina GAIIx
  • Notes (if available): Copy of Nv.S3 No replicates
  • Type of Assembly: Individual
  • Assembled by: Tristan Lubinski
  • Lab: Finnerty
  • Date Sequence: 2011-03-15
  • Sequenced by: Derek Stefanik
  • Date Assembled: 2011-07-13
Nv.C22 Adult New Jersey Foot Regeneration 21 11 ppt artificial seawater 12 hour post treatment

Additional information

  • Clone Line: NJ3
  • Sequencing Tech: Illumina HiSeq
  • Notes (if available): Copy of Nv.S4 No replicates
  • Type of Assembly: Individual
  • Assembled by: Tristan Lubinski
  • Lab: Finnerty
  • Date Sequence: 2012-06-18
  • Sequenced by: Derek Stefanik
  • Date Assembled: 2012-08-13
Nv.C23 Adult New Jersey Foot Regeneration 21 11 ppt artificial seawater 48 hour post treatment

Additional information

  • Clone Line: NJ3
  • Sequencing Tech: Illumina HiSeq
  • Notes (if available): Copy of Nv.S5 No replicates
  • Type of Assembly: Individual
  • Assembled by: Tristan Lubinski
  • Lab: Finnerty
  • Date Sequence: 2012-06-18
  • Sequenced by: Derek Stefanik
  • Date Assembled: 2012-08-13
Nv.C24 Adult New Jersey Head Regeneration 21 11 ppt artificial seawater 12 hour post treatment

Additional information

  • Clone Line: NJ3
  • Sequencing Tech: Illumina HiSeq
  • Notes (if available): Copy of Nv.S6 No replicates
  • Type of Assembly: Individual
  • Assembled by: Tristan Lubinski
  • Lab: Finnerty
  • Date Sequence: 2012-06-18
  • Sequenced by: Derek Stefanik
  • Date Assembled: 2012-08-13
Nv.C25 None New Jersey Multiple None None None None

Additional information

  • Clone Line: NJ3
  • Sequencing Tech: Illumina
  • Notes (if available): Tophat Cufflinks cufmerge guided assembly against the Nemve1 genome from JGI
  • Type of Assembly: Nv.S1, Nv.S2, Nv.S3, Nv.S4, Nv.S5, Nv.S6
  • Assembled by: Tristan Lubinski
  • Lab: Finnerty
  • Date Sequence: None
  • Sequenced by: Tristan Lubinski
  • Date Assembled: 2012-09-13
Nv.C3 Adult Kingsport NS Whole Temperature 21 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: KNG
  • Sequencing Tech: Illumina HiSeq
  • Notes (if available): Nv.S7, Nv.S15
  • Type of Assembly: Combined Replicates
  • Assembled by: Tristan Lubinski
  • Lab: Finnerty
  • Date Sequence: 2013-06-22
  • Sequenced by: Rachel Schweiker
  • Date Assembled: 2013-09-23
Nv.C4 Adult New Jersey Whole Temperature 29 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: NJ3
  • Sequencing Tech: Illumina HiSeq
  • Notes (if available): Nv.S8, Nv.S37
  • Type of Assembly: Combined Replicates
  • Assembled by: Tristan Lubinski
  • Lab: Finnerty
  • Date Sequence: 2013-06-22
  • Sequenced by: Rachel Schweiker
  • Date Assembled: 2013-09-23
Nv.C5 Adult Kingsport NS Whole Temperature 29 11 ppt artificial seawater 28 day post treatment

Additional information

  • Clone Line: KNG
  • Sequencing Tech: Illumina HiSeq
  • Notes (if available): Nv.S9, Nv.S28
  • Type of Assembly: Combined Replicates
  • Assembled by: Tristan Lubinski
  • Lab: Finnerty
  • Date Sequence: 2013-06-18
  • Sequenced by: Rachel Schweiker
  • Date Assembled: 2013-09-23
Nv.C6 Adult Kingsport NS Whole Temperature 21 11 ppt artificial seawater 28 day post treatment

Additional information

  • Clone Line: KNG
  • Sequencing Tech: Illumina HiSeq
  • Notes (if available): Nv.S10, Nv.S20
  • Type of Assembly: Combined Replicates
  • Assembled by: Tristan Lubinski
  • Lab: Finnerty
  • Date Sequence: 2013-06-18
  • Sequenced by: Rachel Schweiker
  • Date Assembled: 2013-09-23
Nv.C7 Adult Baruch SC Whole Temperature 29 11 ppt artificial seawater 28 day post treatment

Additional information

  • Clone Line: BAR
  • Sequencing Tech: Illumina HiSeq
  • Notes (if available): Nv.S11, Nv.S46
  • Type of Assembly: Combined Replicates
  • Assembled by: Tristan Lubinski
  • Lab: Finnerty
  • Date Sequence: 2013-06-18
  • Sequenced by: Rachel Schweiker
  • Date Assembled: 2013-09-23
Nv.C8 Adult Kingsport NS Whole Hydrogen Peroxide 21 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: KNG
  • Sequencing Tech: Illumina HiSeq
  • Notes (if available): Nv.S43, Nv.S45
  • Type of Assembly: Combined Replicates
  • Assembled by: Tristan Lubinski
  • Lab: Finnerty
  • Date Sequence: 2013-04-02
  • Sequenced by: Lauren Friedman
  • Date Assembled: 2013-09-23
Nv.C9 Adult New Jersey Whole Temperature 21 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: NJ3
  • Sequencing Tech: Illumina HiSeq
  • Notes (if available): Nv.S14, Nv.S42
  • Type of Assembly: Combined Replicates
  • Assembled by: Tristan Lubinski
  • Lab: Finnerty
  • Date Sequence: 2013-06-22
  • Sequenced by: Rachel Schweiker
  • Date Assembled: 2013-09-23
Nv.R1 Not Applicable New Jersey Multiple Not Available 21 and 29 NA NA

Additional information

  • Clone Line: NJ3
  • Sequencing Tech: Illumina
  • Notes (if available): Nv.S13, Nv.S1, Nv.S14, Nv.S19, Nv.S2, Nv.S21, Nv.S23, Nv.S24, Nv.S25, Nv.S29, Nv.S3, Nv.S32, Nv.S35, Nv.S36, Nv.S37, Nv.S4, Nv.S41, Nv.S42, Nv.S5, Nv.S50, Nv.S6, Nv.S8
  • Type of Assembly: Multi-Approach
  • Assembled by: Tristan Lubinski
  • Lab: Finnerty
  • Date Sequence: None
  • Sequenced by: Tristan Lubinski
  • Date Assembled: 2013-11-19
Nv.R2 Not Applicable Baruch SC Multiple Not Available 21 and 29 NA NA

Additional information

  • Clone Line: BAR
  • Sequencing Tech: Illumina
  • Notes (if available): Nv.S11, Nv.S16, Nv.S17, Nv.S18, Nv.S26, Nv.S27, Nv.S33, Nv.S34, Nv.S39, Nv.S44, Nv.S46, Nv.S47, Nv.S48, Nv.S51, Nv.S52, Nv.S53
  • Type of Assembly: Multi-Approach
  • Assembled by: Tristan Lubinski
  • Lab: Finnerty
  • Date Sequence: None
  • Sequenced by: Tristan Lubinski
  • Date Assembled: 2013-11-19
Nv.R3 Not Applicable Kingsport NS Multiple Not Available 21 and 29 NA NA

Additional information

  • Clone Line: KNG
  • Sequencing Tech: Illumina
  • Notes (if available): Nv.S10, Nv.S12, Nv.S15, Nv.S20, Nv.S22, Nv.S28, Nv.S30, Nv.S31, Nv.S38, Nv.S40, Nv.S43, Nv.S45, Nv.S49, Nv.S7, Nv.S9
  • Type of Assembly: Multi-Approach
  • Assembled by: Tristan Lubinski
  • Lab: Finnerty
  • Date Sequence: None
  • Sequenced by: Tristan Lubinski
  • Date Assembled: 2013-11-19
Nv.R4 Not Applicable Maryland None None None None None

Additional information

  • Clone Line: CH2+CH3
  • Sequencing Tech: None
  • Notes (if available): Clustered ESTs
  • Type of Assembly: Clustered EST assembly
  • Assembled by: None
  • Lab: None
  • Date Sequence: None
  • Sequenced by: None
  • Date Assembled: None
Nv.T1 Adult New Jersey & Maryland Multiple Not Available 21 NA NA

Additional information

  • Clone Line: NJ3 Maryland
  • Sequencing Tech: NA
  • Notes (if available): CD-HIT EST 100% merger of Clustered ESTs, Reference guided, and De Novo assemblies. Using Nv.S1, Nv.S2, Nv.S3, Nv.S4, Nv.S5, Nv.S6, Nv.S50, Nv.C25
  • Type of Assembly: Multi-Approach
  • Assembled by: Tristan Lubinski
  • Lab: Finnerty
  • Date Sequence: None
  • Sequenced by: Tristan Lubinski
  • Date Assembled: 2013-01-09

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Nematostella vectensis Genomics & Transcriptomics Database
Created by: Tristan Lubinski, Brian Granger, Jim Sullivan,
Joe Ryan, Adam Reitzel, Rachel Schweiker, and Sarah McAnulty
Comments, Suggestions, or Questions?
     Contact me at CnidTeam@gmail.com