StellaBase: Nematostella vectensis Genomics and Transcriptomics Database






Nematostella vectensis Genomic & Transcriptomic Assemblies
Sources of Data and Research

Information about projects that lead to data that has been contributed to this site. We will try to keep all the projects up to date here with links to datasets whenever available. Please right click and choose 'save link as...' to download the files.


The Available Genomes for Nematostella vectensis
AssemblyID Genome Origin
agp04dSuper.fasta.gz Nematostella Phusion Genomic Contigs in FASTA format (version 0.04) Maryland

Additional information

  • Sequencing Tech: Whole Genome Shotgun
  • Type of Assembly: Phusion Genome Assembler
  • Assembled by: Ryan et al. 2006
  • Lab: Finnerty
  • Sequenced by: DOE Joint Genome Institute (JGI)
  • Date Assembled: 2006
  • Notes (if available): The assembly is described in methods section of Ryan et al. 2006 and details of the predicted data found on the original StellaBase can be found in Sullivan et al. 2006. Our assembly and subsequent predicted proteome was made independent of the JGI, who has subsequently released their own assembly: available here. It should be mentioned that the JGI assembly has significantly fewer gaps and that our assembly contain some vector contamination.
Nemve1.fasta.gz (link on page) Nematostella Jazz Genomic Contigs in FASTA format (JGI assembly) Maryland

Additional information

  • Sequencing Tech: Whole Genome Shotgun
  • Type of Assembly: Jazz Genome Assembler
  • Assembled by: Putnam et al. 2007
  • Lab: Rokhsar
  • Sequenced by: DOE Joint Genome Institute (JGI)
  • Date Assembled: 2006
  • Notes (if available): Nematostella vectensis genome assembly 1.0 constructed with the JGI assembler, Jazz, includes approximately 7.8X WGS in small insert end-sequence coverage. After trimming for vector and quality, and excluding short/redundant scaffolds, there were 10,942 assembled scaffolds, containing 2,817,779 reads, and 357 Mbp of sequence. Further exclusion of contaminant and mis-assembled scaffolds reduced this to 10,804 scaffolds, with a total length of 356 Mbp Roughly half of the genome is contained in 181 scaffolds all at least 473 Kb in length. Additional models and annotations are available here.



Available Reference Transcriptome Assemblies
AssemblyID Transcriptome Origin
Nv.T1 Nematostella Reference Transcriptome New Jersey & Maryland

Additional information

  • Clone Line: NJ3 Maryland
  • Sequencing Tech: NA
  • Assembly of: CD-HIT EST 100% merger of Clustered ESTs, Reference guided, and De Novo assemblies. Using Nv.S1, Nv.S2, Nv.S3, Nv.S4, Nv.S5, Nv.S6, Nv.S50, Nv.C25
  • Type of Assembly: Multi-Approach
  • Date Assembled: 2013-01-09
  • Assembled by: Tristan Lubinski
  • Lab: Finnerty
  • Number of Filtered Reads: 81926042
  • Number of Transcripts: 115656
  • N50: 1744
  • Associated Publications (if available): None
Nv.R1 Location Reference Transcriptome New Jersey

Additional information

  • Clone Line: NJ3
  • Sequencing Tech: Illumina
  • Assembly of: Nv.S13, Nv.S1, Nv.S14, Nv.S19, Nv.S2, Nv.S21, Nv.S23, Nv.S24, Nv.S25, Nv.S29, Nv.S3, Nv.S32, Nv.S35, Nv.S36, Nv.S37, Nv.S4, Nv.S41, Nv.S42, Nv.S5, Nv.S50, Nv.S6, Nv.S8
  • Type of Assembly: Multi-Approach
  • Date Assembled: 2013-11-19
  • Assembled by: Tristan Lubinski
  • Lab: Finnerty
  • Number of Filtered Reads: 217351904
  • Number of Transcripts: 133078
  • N50: 1705
  • Associated Publications (if available): None
Nv.R2 Location Reference Transcriptome Baruch SC

Additional information

  • Clone Line: BAR
  • Sequencing Tech: Illumina
  • Assembly of: Nv.S11, Nv.S16, Nv.S17, Nv.S18, Nv.S26, Nv.S27, Nv.S33, Nv.S34, Nv.S39, Nv.S44, Nv.S46, Nv.S47, Nv.S48, Nv.S51, Nv.S52, Nv.S53
  • Type of Assembly: Multi-Approach
  • Date Assembled: 2013-11-19
  • Assembled by: Tristan Lubinski
  • Lab: Finnerty
  • Number of Filtered Reads: 137496009
  • Number of Transcripts: 89172
  • N50: 1889
  • Associated Publications (if available): None
Nv.R3 Location Reference Transcriptome Kingsport NS

Additional information

  • Clone Line: KNG
  • Sequencing Tech: Illumina
  • Assembly of: Nv.S10, Nv.S12, Nv.S15, Nv.S20, Nv.S22, Nv.S28, Nv.S30, Nv.S31, Nv.S38, Nv.S40, Nv.S43, Nv.S45, Nv.S49, Nv.S7, Nv.S9
  • Type of Assembly: Multi-Approach
  • Date Assembled: 2013-11-19
  • Assembled by: Tristan Lubinski
  • Lab: Finnerty
  • Number of Filtered Reads: 142387194
  • Number of Transcripts: 77840
  • N50: 1880
  • Associated Publications (if available): None
Nv.R4 Location Reference Transcriptome Maryland

Additional information

  • Clone Line: CH2+CH3
  • Sequencing Tech: None
  • Assembly of: Clustered ESTs
  • Type of Assembly: Clustered EST assembly
  • Date Assembled: None
  • Assembled by: None
  • Lab: None
  • Number of Filtered Reads: Not Applicable
  • Number of Transcripts: 30813
  • N50: 1033
  • Associated Publications (if available): None



Individual Library Information
Information about the individual sample data sets used in the generation of the references.
AssemblyID LifeCycle Origin BodyRegion Assay Temp Medium Time
Nv.S1 Adult New Jersey Foot Regeneration 21 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: NJ3
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2012-06-18
  • Sequenced by: Derek Stefanik
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2012-08-13
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 7350208
  • Number of Filtered Reads: 7184128
  • Percent Alignment to NvT1: 94.88
  • Percent Coverage of NvT1: 63.098654826
  • Number of Transcripts: 63592
  • N50: 884
Nv.S2 Adult New Jersey Whole Not Available 21 11 ppt artificial seawater Not Available

Additional information

  • Clone Line: NJ3
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina GAIIx
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2010-07-01
  • Sequenced by: Derek Stefanik
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2010-07-29
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 37468874
  • Number of Filtered Reads: 28102821
  • Percent Alignment to NvT1: 88.93
  • Percent Coverage of NvT1: 76.4779411945
  • Number of Transcripts: 125082
  • N50: 498
Nv.S3 Adult New Jersey Foot Regeneration 21 11 ppt artificial seawater 6 hour post treatment

Additional information

  • Clone Line: NJ3
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina GAIIx
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2011-03-15
  • Sequenced by: Derek Stefanik
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2011-07-13
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 31325939
  • Number of Filtered Reads: 30631443
  • Percent Alignment to NvT1: 95.53
  • Percent Coverage of NvT1: 71.3747865168
  • Number of Transcripts: 76166
  • N50: 724
Nv.S4 Adult New Jersey Foot Regeneration 21 11 ppt artificial seawater 12 hour post treatment

Additional information

  • Clone Line: NJ3
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2012-06-18
  • Sequenced by: Derek Stefanik
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2012-08-13
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 4108100
  • Number of Filtered Reads: 3307060
  • Percent Alignment to NvT1: 94.76
  • Percent Coverage of NvT1: 39.8416998411
  • Number of Transcripts: 23464
  • N50: 767
Nv.S5 Adult New Jersey Foot Regeneration 21 11 ppt artificial seawater 48 hour post treatment

Additional information

  • Clone Line: NJ3
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2012-06-18
  • Sequenced by: Derek Stefanik
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2012-08-13
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 7014663
  • Number of Filtered Reads: 6619333
  • Percent Alignment to NvT1: 94.72
  • Percent Coverage of NvT1: 62.262934813
  • Number of Transcripts: 58893
  • N50: 815
Nv.S6 Adult New Jersey Head Regeneration 21 11 ppt artificial seawater 12 hour post treatment

Additional information

  • Clone Line: NJ3
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2012-06-18
  • Sequenced by: Derek Stefanik
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2012-08-13
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 7826681
  • Number of Filtered Reads: 6081257
  • Percent Alignment to NvT1: 94.75
  • Percent Coverage of NvT1: 56.5867770077
  • Number of Transcripts: 48887
  • N50: 826
Nv.S7 Adult Kingsport NS Whole Temperature 21 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: KNG
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-06-22
  • Sequenced by: Rachel Schweiker
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 28786649
  • Number of Filtered Reads: 17030849
  • Percent Alignment to NvT1: 96.45
  • Percent Coverage of NvT1: 75.6412403542
  • Number of Transcripts: 96833
  • N50: 1024
Nv.S8 Adult New Jersey Whole Temperature 29 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: NJ3
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-06-22
  • Sequenced by: Rachel Schweiker
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 16064214
  • Number of Filtered Reads: 13450996
  • Percent Alignment to NvT1: 95.8
  • Percent Coverage of NvT1: 71.4202984351
  • Number of Transcripts: 83555
  • N50: 731
Nv.S9 Adult Kingsport NS Whole Temperature 29 11 ppt artificial seawater 28 day post treatment

Additional information

  • Clone Line: KNG
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-06-18
  • Sequenced by: Rachel Schweiker
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 15724950
  • Number of Filtered Reads: 15995002
  • Percent Alignment to NvT1: 95.55
  • Percent Coverage of NvT1: 69.9460460707
  • Number of Transcripts: 79163
  • N50: 889
Nv.S10 Adult Kingsport NS Whole Temperature 21 11 ppt artificial seawater 28 day post treatment

Additional information

  • Clone Line: KNG
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-06-18
  • Sequenced by: Rachel Schweiker
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 17216521
  • Number of Filtered Reads: 17030849
  • Percent Alignment to NvT1: 95.97
  • Percent Coverage of NvT1: 68.6087731322
  • Number of Transcripts: 74078
  • N50: 785
Nv.S11 Adult Baruch SC Whole Temperature 29 11 ppt artificial seawater 28 day post treatment

Additional information

  • Clone Line: BAR
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-06-18
  • Sequenced by: Rachel Schweiker
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 14522564
  • Number of Filtered Reads: 14508085
  • Percent Alignment to NvT1: 94.37
  • Percent Coverage of NvT1: 71.8342581206
  • Number of Transcripts: 84472
  • N50: 893
Nv.S12 Adult Kingsport NS Whole Hydrogen Peroxide 21 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: KNG
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-10-02
  • Sequenced by: Lauren Friedman
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-10-07
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 6235299
  • Number of Filtered Reads: 6231974
  • Percent Alignment to NvT1: 95
  • Percent Coverage of NvT1: 50.3243534509
  • Number of Transcripts: 36030
  • N50: 517
Nv.S13 Adult New Jersey Whole Hydrogen Peroxide 21 0.0005% H2O2, 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: NJ3
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-10-02
  • Sequenced by: Lauren Friedman
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-10-07
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 4032935
  • Number of Filtered Reads: 4031386
  • Percent Alignment to NvT1: 87.82
  • Percent Coverage of NvT1: 24.1125995846
  • Number of Transcripts: 27961
  • N50: 290
Nv.S14 Adult New Jersey Whole Temperature 21 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: NJ3
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-06-22
  • Sequenced by: Rachel Schweiker
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 13342178
  • Number of Filtered Reads: 13238550
  • Percent Alignment to NvT1: 96.99
  • Percent Coverage of NvT1: 60.4814344722
  • Number of Transcripts: 59447
  • N50: 650
Nv.S15 Adult Kingsport NS Whole Temperature 21 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: KNG
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-06-22
  • Sequenced by: Rachel Schweiker
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 5256015
  • Number of Filtered Reads: 5236335
  • Percent Alignment to NvT1: 94.92
  • Percent Coverage of NvT1: 48.9227888169
  • Number of Transcripts: 28406
  • N50: 758
Nv.S16 Adult Baruch SC Whole Temperature 29 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: BAR
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-06-22
  • Sequenced by: Rachel Schweiker
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 8161476
  • Number of Filtered Reads: 8154479
  • Percent Alignment to NvT1: 94.4
  • Percent Coverage of NvT1: 56.3525723115
  • Number of Transcripts: 46924
  • N50: 600
Nv.S17 Adult Baruch SC Whole Temperature 21 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: BAR
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-06-22
  • Sequenced by: Rachel Schweiker
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 7574881
  • Number of Filtered Reads: 7513891
  • Percent Alignment to NvT1: 94.9
  • Percent Coverage of NvT1: 55.6292014656
  • Number of Transcripts: 43992
  • N50: 597
Nv.S18 Adult Baruch SC Whole Temperature 21 11 ppt artificial seawater 28 day post treatment

Additional information

  • Clone Line: BAR
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-06-18
  • Sequenced by: Rachel Schweiker
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 16005877
  • Number of Filtered Reads: 15995002
  • Percent Alignment to NvT1: 94.46
  • Percent Coverage of NvT1: 74.4360810188
  • Number of Transcripts: 89996
  • N50: 982
Nv.S19 Adult New Jersey Whole Temperature 29 11 ppt artificial seawater 28 day post treatment

Additional information

  • Clone Line: NJ3
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-06-18
  • Sequenced by: Rachel Schweiker
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 15480664
  • Number of Filtered Reads: 15454638
  • Percent Alignment to NvT1: 94.68
  • Percent Coverage of NvT1: 70.6488586236
  • Number of Transcripts: 87533
  • N50: 726
Nv.S20 Adult Kingsport NS Whole Temperature 21 11 ppt artificial seawater 28 day post treatment

Additional information

  • Clone Line: KNG
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-06-18
  • Sequenced by: Rachel Schweiker
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 11356957
  • Number of Filtered Reads: 11350586
  • Percent Alignment to NvT1: 95.02
  • Percent Coverage of NvT1: 64.8942767809
  • Number of Transcripts: 67503
  • N50: 726
Nv.S21 Adult New Jersey Whole Hydrogen Peroxide 21 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: NJ3
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-04-02
  • Sequenced by: Lauren Friedman
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 4235682
  • Number of Filtered Reads: 4232226
  • Percent Alignment to NvT1: 94.43
  • Percent Coverage of NvT1: 47.7919938134
  • Number of Transcripts: 23556
  • N50: 716
Nv.S22 Adult Kingsport NS Whole Hydrogen Peroxide 21 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: KNG
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-10-02
  • Sequenced by: Lauren Friedman
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-10-07
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 8511328
  • Number of Filtered Reads: 8295044
  • Percent Alignment to NvT1: 92.4
  • Percent Coverage of NvT1: 56.4729481706
  • Number of Transcripts: 49244
  • N50: 467
Nv.S23 Adult New Jersey Whole Hydrogen Peroxide 21 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: NJ3
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-04-02
  • Sequenced by: Lauren Friedman
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 9853289
  • Number of Filtered Reads: 9845120
  • Percent Alignment to NvT1: 94.55
  • Percent Coverage of NvT1: 66.5644792788
  • Number of Transcripts: 59851
  • N50: 866
Nv.S24 Adult New Jersey Whole Hydrogen Peroxide 21 0.0005% H2O2, 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: NJ3
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-04-02
  • Sequenced by: Lauren Friedman
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 9514619
  • Number of Filtered Reads: 9506310
  • Percent Alignment to NvT1: 94.67
  • Percent Coverage of NvT1: 67.4315390222
  • Number of Transcripts: 62533
  • N50: 766
Nv.S25 Adult New Jersey Whole Hydrogen Peroxide 21 0.0005% H2O2, 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: NJ3
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-04-02
  • Sequenced by: Lauren Friedman
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 9660962
  • Number of Filtered Reads: 9653729
  • Percent Alignment to NvT1: 94.58
  • Percent Coverage of NvT1: 67.973912753
  • Number of Transcripts: 63509
  • N50: 772
Nv.S26 Adult Baruch SC Whole Temperature 21 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: BAR
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-06-22
  • Sequenced by: Rachel Schweiker
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 6694480
  • Number of Filtered Reads: 6677813
  • Percent Alignment to NvT1: 94.26
  • Percent Coverage of NvT1: 53.2225187522
  • Number of Transcripts: 39948
  • N50: 570
Nv.S27 Adult Baruch SC Whole Hydrogen Peroxide 21 0.0005% H2O2, 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: BAR
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-04-02
  • Sequenced by: Lauren Friedman
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 8459359
  • Number of Filtered Reads: 8452212
  • Percent Alignment to NvT1: 94.36
  • Percent Coverage of NvT1: 63.1049405496
  • Number of Transcripts: 52667
  • N50: 779
Nv.S28 Adult Kingsport NS Whole Temperature 29 11 ppt artificial seawater 28 day post treatment

Additional information

  • Clone Line: KNG
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-06-18
  • Sequenced by: Rachel Schweiker
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 9252797
  • Number of Filtered Reads: 9227221
  • Percent Alignment to NvT1: 95.3
  • Percent Coverage of NvT1: 54.0645666337
  • Number of Transcripts: 43547
  • N50: 727
Nv.S29 Adult New Jersey Whole Hydrogen Peroxide 21 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: NJ3
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-10-02
  • Sequenced by: Lauren Friedman
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-10-07
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 7483463
  • Number of Filtered Reads: 7408819
  • Percent Alignment to NvT1: 94.65
  • Percent Coverage of NvT1: 54.713848239
  • Number of Transcripts: 43198
  • N50: 468
Nv.S30 Adult Kingsport NS Whole Temperature 29 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: KNG
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-06-22
  • Sequenced by: Rachel Schweiker
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 6193149
  • Number of Filtered Reads: 5681609
  • Percent Alignment to NvT1: 93.23
  • Percent Coverage of NvT1: 48.5358838725
  • Number of Transcripts: 35208
  • N50: 565
Nv.S31 Adult Kingsport NS Whole Hydrogen Peroxide 21 0.0005% H2O2, 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: KNG
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-10-02
  • Sequenced by: Lauren Friedman
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-10-07
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 12561661
  • Number of Filtered Reads: 12384986
  • Percent Alignment to NvT1: 92.98
  • Percent Coverage of NvT1: 65.9864808285
  • Number of Transcripts: 71795
  • N50: 562
Nv.S32 Adult New Jersey Whole Temperature 29 11 ppt artificial seawater 28 day post treatment

Additional information

  • Clone Line: NJ3
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-06-18
  • Sequenced by: Rachel Schweiker
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 17973685
  • Number of Filtered Reads: 17917592
  • Percent Alignment to NvT1: 94.3
  • Percent Coverage of NvT1: 75.2150203276
  • Number of Transcripts: 98591
  • N50: 845
Nv.S33 Adult Baruch SC Whole Hydrogen Peroxide 21 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: BAR
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-04-02
  • Sequenced by: Lauren Friedman
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 2412712
  • Number of Filtered Reads: 2410011
  • Percent Alignment to NvT1: 93.88
  • Percent Coverage of NvT1: 35.2029898681
  • Number of Transcripts: 12271
  • N50: 628
Nv.S34 Adult Baruch SC Whole Temperature 21 11 ppt artificial seawater 28 day post treatment

Additional information

  • Clone Line: BAR
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-06-18
  • Sequenced by: Rachel Schweiker
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 13476382
  • Number of Filtered Reads: 13450996
  • Percent Alignment to NvT1: 93.46
  • Percent Coverage of NvT1: 71.8794566339
  • Number of Transcripts: 86381
  • N50: 882
Nv.S35 Adult New Jersey Whole Temperature 21 11 ppt artificial seawater 28 day post treatment

Additional information

  • Clone Line: NJ3
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-06-18
  • Sequenced by: Rachel Schweiker
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 15181978
  • Number of Filtered Reads: 15056099
  • Percent Alignment to NvT1: 94.92
  • Percent Coverage of NvT1: 72.0245048968
  • Number of Transcripts: 84368
  • N50: 681
Nv.S36 Adult New Jersey Whole Temperature 21 11 ppt artificial seawater 28 day post treatment

Additional information

  • Clone Line: NJ3
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-06-18
  • Sequenced by: Rachel Schweiker
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 14572286
  • Number of Filtered Reads: 14513186
  • Percent Alignment to NvT1: 94.95
  • Percent Coverage of NvT1: 70.0992007177
  • Number of Transcripts: 78406
  • N50: 631
Nv.S37 Adult New Jersey Whole Temperature 29 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: NJ3
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-06-22
  • Sequenced by: Rachel Schweiker
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 12777187
  • Number of Filtered Reads: 12381414
  • Percent Alignment to NvT1: 95.07
  • Percent Coverage of NvT1: 67.7529898374
  • Number of Transcripts: 71361
  • N50: 712
Nv.S38 Adult Kingsport NS Whole Hydrogen Peroxide 21 0.0005% H2O2, 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: KNG
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-04-02
  • Sequenced by: Lauren Friedman
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 6330551
  • Number of Filtered Reads: 6316370
  • Percent Alignment to NvT1: 94.68
  • Percent Coverage of NvT1: 56.0651293834
  • Number of Transcripts: 38580
  • N50: 737
Nv.S39 Adult Baruch SC Whole Hydrogen Peroxide 21 0.0005% H2O2, 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: BAR
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-04-02
  • Sequenced by: Lauren Friedman
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 12683268
  • Number of Filtered Reads: 12664602
  • Percent Alignment to NvT1: 94.15
  • Percent Coverage of NvT1: 74.0111973694
  • Number of Transcripts: 81255
  • N50: 846
Nv.S40 Adult Kingsport NS Whole Hydrogen Peroxide 21 0.0005% H2O2, 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: KNG
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-04-02
  • Sequenced by: Lauren Friedman
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 5883462
  • Number of Filtered Reads: 5876940
  • Percent Alignment to NvT1: 94.87
  • Percent Coverage of NvT1: 53.3329338506
  • Number of Transcripts: 32690
  • N50: 787
Nv.S41 Adult New Jersey Whole Hydrogen Peroxide 21 0.0005% H2O2, 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: NJ3
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-10-02
  • Sequenced by: Lauren Friedman
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-10-07
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 4484319
  • Number of Filtered Reads: 4483110
  • Percent Alignment to NvT1: 87.64
  • Percent Coverage of NvT1: 26.0872393758
  • Number of Transcripts: 27373
  • N50: 293
Nv.S42 Adult New Jersey Whole Temperature 21 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: NJ3
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-06-22
  • Sequenced by: Rachel Schweiker
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 7383551
  • Number of Filtered Reads: 7350962
  • Percent Alignment to NvT1: 95.73
  • Percent Coverage of NvT1: 56.6947484668
  • Number of Transcripts: 41567
  • N50: 598
Nv.S43 Adult Kingsport NS Whole Hydrogen Peroxide 21 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: KNG
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-04-02
  • Sequenced by: Lauren Friedman
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 8800453
  • Number of Filtered Reads: 8777613
  • Percent Alignment to NvT1: 95.08
  • Percent Coverage of NvT1: 59.3137841175
  • Number of Transcripts: 45107
  • N50: 888
Nv.S44 Adult Baruch SC Whole Temperature 29 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: BAR
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-06-22
  • Sequenced by: Rachel Schweiker
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 5571041
  • Number of Filtered Reads: 5556629
  • Percent Alignment to NvT1: 94.88
  • Percent Coverage of NvT1: 47.0491060372
  • Number of Transcripts: 30586
  • N50: 567
Nv.S45 Adult Kingsport NS Whole Hydrogen Peroxide 21 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: KNG
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-04-02
  • Sequenced by: Lauren Friedman
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 3267372
  • Number of Filtered Reads: 3260766
  • Percent Alignment to NvT1: 94.86
  • Percent Coverage of NvT1: 38.4086966277
  • Number of Transcripts: 15296
  • N50: 739
Nv.S46 Adult Baruch SC Whole Temperature 29 11 ppt artificial seawater 28 day post treatment

Additional information

  • Clone Line: BAR
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-06-18
  • Sequenced by: Rachel Schweiker
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 13592932
  • Number of Filtered Reads: 13584909
  • Percent Alignment to NvT1: 94.07
  • Percent Coverage of NvT1: 71.4030397063
  • Number of Transcripts: 84220
  • N50: 871
Nv.S47 Adult Baruch SC Whole Hydrogen Peroxide 21 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: BAR
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-04-02
  • Sequenced by: Lauren Friedman
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 5173343
  • Number of Filtered Reads: 4606238
  • Percent Alignment to NvT1: 92.63
  • Percent Coverage of NvT1: 36.6401569998
  • Number of Transcripts: 17085
  • N50: 407
Nv.S48 Adult Baruch SC Whole Hydrogen Peroxide 21 0.0005% H2O2, 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: BAR
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-10-02
  • Sequenced by: Lauren Friedman
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-10-07
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 3073844
  • Number of Filtered Reads: 3057662
  • Percent Alignment to NvT1: 86.24
  • Percent Coverage of NvT1: 22.5289558603
  • Number of Transcripts: 20706
  • N50: 274
Nv.S49 Adult Kingsport NS Whole Temperature 29 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: KNG
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-06-22
  • Sequenced by: Rachel Schweiker
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-08-20
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 9725536
  • Number of Filtered Reads: 9691050
  • Percent Alignment to NvT1: 95.61
  • Percent Coverage of NvT1: 57.6822921137
  • Number of Transcripts: 48192
  • N50: 793
Nv.S50 Adult New Jersey Whole Hydrogen Peroxide 21 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: NJ3
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-10-02
  • Sequenced by: Lauren Friedman
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-10-07
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 6966067
  • Number of Filtered Reads: 6901725
  • Percent Alignment to NvT1: 94.4
  • Percent Coverage of NvT1: 53.2575028689
  • Number of Transcripts: 41478
  • N50: 470
Nv.S51 Adult Baruch SC Whole Hydrogen Peroxide 21 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: BAR
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-10-02
  • Sequenced by: Lauren Friedman
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-10-07
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 7419291
  • Number of Filtered Reads: 7410390
  • Percent Alignment to NvT1: 94.29
  • Percent Coverage of NvT1: 54.7285330625
  • Number of Transcripts: 45407
  • N50: 485
Nv.S52 Adult Baruch SC Whole Hydrogen Peroxide 21 0.0005% H2O2, 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: BAR
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-10-02
  • Sequenced by: Lauren Friedman
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-10-07
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 5025486
  • Number of Filtered Reads: 4910592
  • Percent Alignment to NvT1: 86.6
  • Percent Coverage of NvT1: 24.829444864
  • Number of Transcripts: 30011
  • N50: 267
Nv.S53 Adult Baruch SC Whole Hydrogen Peroxide 21 11 ppt artificial seawater 24 hour post treatment

Additional information

  • Clone Line: BAR
  • Lat. Long. (if avail): None
  • Sequencing Tech: Illumina HiSeq
  • Type of Assembly: Individual
  • Lab: Finnerty
  • Date Sequenced: 2013-10-02
  • Sequenced by: Lauren Friedman
  • Associated Publication: None
  • Notes (if available): None

Assembly Statistics

  • Date Assembled: 2013-10-07
  • Assembled by: Tristan Lubinski
  • Number of Raw Reads: 8554359
  • Number of Filtered Reads: 8542498
  • Percent Alignment to NvT1: 94.06
  • Percent Coverage of NvT1: 57.6604365233
  • Number of Transcripts: 51072
  • N50: 531


Nematostella vectensis Genomics & Transcriptomics Database
Created by: Tristan Lubinski, Brian Granger, Jim Sullivan,
Joe Ryan, Adam Reitzel, Rachel Schweiker, and Sarah McAnulty
Comments, Suggestions, or Questions?
     Contact me at CnidTeam@gmail.com